Pre-drill and don't torque down on the screws as the plastic will crack. I would skip the RTV, personally.
Exactly. The base plastic is very brittle. But you're not entering a beauty contest; if a hold cracks when you're screwing it together, start a new hole with a slightly larger drill.
I used a similar thermometer for a while, and had a hard time finding a satisfactory way to keep the tip of the wire in the beans. You can mount it to the bottom somehow with the nib protruding into the beans, but that makes it awkward when it's time to dump the beans. Not to blow my own horn, but after several renditions, the metal probe mounted in a slot at a low angle so most of the tip is submerged in beans, and weighted toward the tip (w/o interfering w/ the arms) is the cat's meow.
Check the rotation of the convection before mounting your spacer/chaff ejector too.